David Caruana 609d117e58 Fix AR-431, AR-432.
Modified the Repository bootstrap mechanism so it's performed after all other initialisation and the order of bootstrap is explicit.

git-svn-id: https://svn.alfresco.com/repos/alfresco-enterprise/alfresco/HEAD/root@2414 c4b6b30b-aa2e-2d43-bbcb-ca4b014f7261
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